PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G221500.1
Common NamePHAVU_001G221500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 442aa    MW: 49297.5 Da    PI: 7.4303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G221500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Phvul.001G221500.1 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP

2Myb_DNA-binding42.12e-1367110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+  ++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Phvul.001G221500.1  67 RGAFSQQEENSIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                         89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.407965IPR017930Myb domain
SuperFamilySSF466894.87E-2912108IPR009057Homeodomain-like
SMARTSM007172.2E-131363IPR001005SANT/Myb domain
PfamPF002493.3E-161461IPR001005SANT/Myb domain
CDDcd001674.56E-121761No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2565116IPR009057Homeodomain-like
SMARTSM007172.0E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129419.25166116IPR017930Myb domain
PfamPF002492.0E-1267111IPR001005SANT/Myb domain
CDDcd001674.87E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQQEENSIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPNTHQPLY EVENDKDKPL TADRSNQKAS NEVSVVEPPK QKPITTTTTT SMPMDRYPLE  180
VSPTSKISSG NNNSSSTLDR FGTCHDNNSS ITSSDMMGMG YFPFQHLNYG PNMGLTTATT  240
NNTPLCFIPS STSSQMMSEL NSTMLHSVFS THVKPTVSLQ SNNNNPSSIF SDGVQNWEGS  300
TFSNNNNNNA SKSNGSSSCS IQLQSSTNFL DHGSTITWGL QAESATKADN KDAHSSHVVP  360
LQSEQEDIKW SEYLNNTPFF LGTTVQQHQT THSLYSDEVK PETAFIADES STSWHHSQHF  420
QPSDIYSKDL QRFSVAFGQT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163283.10.0hypothetical protein PHAVU_001G221500g
TrEMBLV7CYN50.0V7CYN5_PHAVU; Uncharacterized protein
STRINGGLYMA19G41250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108333103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-110myb domain protein 61